MolNFT v1 · #157914 · protein

Crystal structure of a consensus PDZ domain

6NEK: “Crystal structure of a consensus PDZ domain”. X-ray diffraction, 1 pocket (best druggability 0.43). MolNFT v1 #157914 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6NEK
Type: protein
Length: 86 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Consensus PDZ domain
Pockets: 1 · best druggability 0.43

Structure

x-ray diffraction · 1 distinct chain · 10% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Consensus PDZ domain	protein	86	10% helix, 16% strand	—

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	98	0.43	0.77	19	empty

Compared structures

6NEK · Crystal structure of a consensus PDZ domain · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6NEK · PDBe 6NEK

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