MolNFT v1 · #157824 · protein

Crystal structure of a sugar N-formyltransferase from the plant pathogen pantoea ananatis

6NBP: “Crystal structure of a sugar N-formyltransferase from the plant pathogen pantoea ananatis”. X-ray diffraction, 4 ligands (0FX, FON, NA), 1 pocket (best druggability 0.72). MolNFT v1 #157824 on GenesisL1: 3D structure, binding sites…

PDB: 6NBP
Type: protein
Length: 246 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: N-formyltransferase
Ligands: 0FX, FON, NA, PO4
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	N-formyltransferase	protein	246	34% helix, 21% strand	—

Ligands and binding sites

0FX · dTDP-4-amino-4,6-dideoxyglucose · ligand · chains A
FON · N-{[4-({[(6R)-2-amino-5-formyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)phenyl]carbonyl}-L-glutamic acid · ligand · chains A
NA · Sodium ion · metal · chains A
PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	593	0.72	0.80	48	0FX, FON

Compared structures

6NBP · Crystal Structure of a Sugar N-Formyltransferase from the Plant Pathogen Pantoea ananatis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6NBP · PDBe 6NBP

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