MolNFT v1 · #15780 · protein

Crystal structure of phzd protein active site mutant with substrate

1NF8 · Phenazine biosynthesis protein phzd: “Crystal structure of phzd protein active site mutant with substrate”. X-ray diffraction, 1 ligand (ISC), 1 pocket (best druggability 0.74). MolNFT v1 #15780 on GenesisL1: 3D structure, binding…

PDB: 1NF8
Type: protein
Length: 207 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phenazine biosynthesis protein phzd
EC: 3.3.2.1
UniProt: Q7DC80
Ligands: ISC
Pockets: 1 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phenazine biosynthesis protein phzd (EC 3.3.2.1)	protein	207	43% helix, 18% strand	Q7DC80

Ligands and binding sites

ISC · (5S,6S)-5-[(1-carboxyethenyl)oxy]-6-hydroxycyclohexa-1,3-diene-1-carboxylic acid · ligand · chains A
BOG · octyl beta-D-glucopyranoside · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	83	0.74	0.96	21	ISC

Compared structures

1NF8 · Crystal structure of PhzD protein active site mutant with substrate · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7DC80
Elsewhere: RCSB PDB 1NF8 · PDBe 1NF8 · UniProt Q7DC80

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