MolNFT v1 · #157798 · protein
Crystal structure of neisseria meningitidis clpp protease E31A+E58A activated double mutant
6NAY · ATP-dependent clp protease proteolytic subunit: “Crystal structure of neisseria meningitidis clpp protease E31A+E58A activated double mutant”. X-ray diffraction, 20 pockets (best druggability 0.81). MolNFT v1 #157798 on GenesisL1…
- PDB
- 6NAY
- Type
- protein
- Length
- 4,905 residues
- Chains
- 28
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ATP-dependent clp protease proteolytic subunit
- EC
- 3.4.21.92
- UniProt
- A0A0H5Q9L9
- Pockets
- 20 · best druggability 0.81
Structure
x-ray diffraction · 17 distinct chains · 48% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 174 | 48% helix, 22% strand | A0A0H5Q9L9 |
| B, O, a | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 174 | 48% helix, 23% strand | A0A0H5Q9L9 |
| C, L, Q, Z | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 175 | 48% helix, 23% strand | A0A0H5Q9L9 |
| D | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 175 | 48% helix, 22% strand | A0A0H5Q9L9 |
| E | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 173 | 49% helix, 23% strand | A0A0H5Q9L9 |
| F | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 178 | 47% helix, 22% strand | A0A0H5Q9L9 |
| G | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 178 | 49% helix, 22% strand | A0A0H5Q9L9 |
| H, V | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 175 | 48% helix, 22% strand | A0A0H5Q9L9 |
| I, R, W | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 174 | 48% helix, 22% strand | A0A0H5Q9L9 |
| J, K, T, X | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 176 | 48% helix, 23% strand | A0A0H5Q9L9 |
| M | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 172 | 49% helix, 23% strand | A0A0H5Q9L9 |
| N | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 177 | 47% helix, 23% strand | A0A0H5Q9L9 |
| P | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 177 | 47% helix, 23% strand | A0A0H5Q9L9 |
| S | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 172 | 49% helix, 23% strand | A0A0H5Q9L9 |
| U | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 176 | 48% helix, 23% strand | A0A0H5Q9L9 |
| Y | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 179 | 49% helix, 23% strand | A0A0H5Q9L9 |
| b | ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) | protein | 176 | 48% helix, 22% strand | A0A0H5Q9L9 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 827 | 0.81 | 0.83 | 77 | empty |
| 2 | 1174 | 0.78 | 0.79 | 155 | empty |
| 3 | 964 | 0.76 | 0.79 | 122 | empty |
| 4 | 758 | 0.72 | 0.78 | 102 | empty |
| 5 | 617 | 0.72 | 0.79 | 82 | empty |
Interfaces
75 interfaces between chains.
- O–U · 1341 Ų buried · 15 hydrogen bonds · protein-protein
- C–D · 1330 Ų buried · 13 hydrogen bonds · protein-protein
- a–b · 1318 Ų buried · 15 hydrogen bonds · protein-protein
- Z–a · 1312 Ų buried · 13 hydrogen bonds · protein-protein
- H–N · 1311 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 6NAY · Crystal structure of Neisseria meningitidis ClpP protease E31A+E58A activated double… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H5Q9L9
- Elsewhere: RCSB PDB 6NAY · PDBe 6NAY · UniProt A0A0H5Q9L9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.