MolNFT v1 · #157754 · protein
Xylose isomerase 1F1 variant from streptomyces sp. F-1
6N98: “Xylose isomerase 1F1 variant from streptomyces sp. F-1”. X-ray diffraction, 2 ligands (MG, SO4), 3 pockets (best druggability 0.72). MolNFT v1 #157754 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6N98
- Type
- protein
- Length
- 379 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Xylose isomerase
- EC
- 5.3.1.5
- UniProt
- A0A1K2FZ20
- Ligands
- MG, SO4
- Pockets
- 3 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xylose isomerase (EC 5.3.1.5) | protein | 379 | 49% helix, 10% strand | A0A1K2FZ20 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 496 | 0.72 | 0.81 | 59 | empty |
| 2 | 57 | 0.35 | 0.78 | 11 | empty |
| 3 | 62 | 0.28 | 0.73 | 16 | empty |
Compared structures
- 6N98 · Xylose isomerase 1F1 variant from Streptomyces sp. F-1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1K2FZ20
- Elsewhere: RCSB PDB 6N98 · PDBe 6N98 · UniProt A0A1K2FZ20
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