MolNFT v1 · #157746 · protein
YOEB/PARE toxin from agrobacterium tumefaciens
6N90 · Uncharacterized protein: “YOEB/PARE toxin from agrobacterium tumefaciens”. X-ray diffraction, 1 ligand (TEW), 1 pocket (best druggability 0.31). MolNFT v1 #157746 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6N90
- Type
- protein
- Length
- 174 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- A9CID9
- Ligands
- TEW
- Pockets
- 1 · best druggability 0.31
Structure
x-ray diffraction · 2 distinct chains · 37% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 88 | 36% helix, 35% strand | A9CID9 |
| B | Uncharacterized protein | protein | 86 | 37% helix, 31% strand | A9CID9 |
Ligands and binding sites
- TEW · 6-tungstotellurate(VI) · ligand · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.31 | 0.74 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 769 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 6N90 · YoeB/ParE toxin from Agrobacterium tumefaciens · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9CID9
- Elsewhere: RCSB PDB 6N90 · PDBe 6N90 · UniProt A9CID9
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