MolNFT v1 · #15762 · protein
Crystal structure analysis of the bovine NPC2 (niemann-pick C2) protein
1NEP · Epididymal secretory protein E1: “Crystal structure analysis of the bovine NPC2 (niemann-pick C2) protein”. X-ray diffraction, 2 ligands (NAG, PO4). MolNFT v1 #15762 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1NEP
- Type
- protein
- Length
- 130 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Epididymal secretory protein E1
- UniProt
- P79345
- Ligands
- NAG, PO4
Structure
x-ray diffraction · 1 distinct chain · 2% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Epididymal secretory protein E1 | protein | 130 | 2% helix, 55% strand | P79345 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 3 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
- 1NEP · Crystal Structure Analysis of the Bovine NPC2 (Niemann-Pick C2) Protein · the same entry in another collection · chain A against A, TM-score 1.00
- P79345 · AlphaFold monomer V2.0 prediction for npc intracellular cholesterol transporter 2 (P79345) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P79345
- Elsewhere: RCSB PDB 1NEP · PDBe 1NEP · UniProt P79345
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