MolNFT v1 · #157599 · protein

Ids-oxidized ADP-bound form of the nitrogenase fe-protein from a. vinelandii

6N4M · Nitrogenase iron protein 1: “Ids-oxidized ADP-bound form of the nitrogenase fe-protein from a. vinelandii”. X-ray diffraction, 3 ligands (ADP, SF4, MG), 1 pocket (best druggability 0.42). MolNFT v1 #157599 on GenesisL1: 3D…

PDB: 6N4M
Type: protein
Length: 283 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nitrogenase iron protein 1
EC: 1.18.6.1
UniProt: P00459
Ligands: ADP, SF4, MG
Pockets: 1 · best druggability 0.42

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nitrogenase iron protein 1 (EC 1.18.6.1)	protein	283	42% helix, 16% strand	P00459

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · chains A
SF4 · Iron/sulfur cluster · ligand · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	99	0.42	0.78	24	ADP, MG

Compared structures

6N4M · IDS-oxidized ADP-bound form of the nitrogenase Fe-protein from A. vinelandii · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00459
Elsewhere: RCSB PDB 6N4M · PDBe 6N4M · UniProt P00459

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