MolNFT v1 · #15753 · protein
Structure of archaeal translation factor AIF2BETA from methanobacterium thermoautrophicum
1NEE · Probable translation initiation factor 2 beta subunit: “Structure of archaeal translation factor AIF2BETA from methanobacterium thermoautrophicum”. Solution nmr, 1 ligand (ZN), 5 pockets (best druggability 0.46). MolNFT v1 #15753 on…
- PDB
- 1NEE
- Type
- protein
- Length
- 135 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable translation initiation factor 2 beta subunit
- UniProt
- O27797
- Ligands
- ZN
- Pockets
- 5 · best druggability 0.46
Structure
solution nmr · 1 distinct chain · 25% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable translation initiation factor 2 beta subunit | protein | 135 | 25% helix, 13% strand | O27797 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 94 | 0.46 | 0.80 | 22 | empty |
| 2 | 83 | 0.45 | 0.80 | 19 | empty |
| 3 | 112 | 0.42 | 0.76 | 16 | empty |
| 4 | 111 | 0.39 | 0.75 | 21 | empty |
| 5 | 55 | 0.29 | 0.74 | 13 | empty |
Compared structures
- 1NEE · Structure of archaeal translation factor aIF2beta from Methanobacterium thermoautrophicum · the same entry in another collection · chain A against A, TM-score 1.00
- O27797 · AlphaFold monomer V2.0 prediction for translation initiation factor 2 subunit beta… · a predicted model of the same protein · chain A against A, TM-score 0.37
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O27797
- Elsewhere: RCSB PDB 1NEE · PDBe 1NEE · UniProt O27797
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