MolNFT v1 · #157504 · protein
Crystal structure of class D beta-lactamase from sebaldella termitidis atcc 33386
6N1N: “Crystal structure of class D beta-lactamase from sebaldella termitidis atcc 33386”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.34). MolNFT v1 #157504 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6N1N
- Type
- protein
- Length
- 248 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-lactamase
- EC
- 3.5.2.6
- UniProt
- D1ALR7
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.34
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-lactamase (EC 3.5.2.6) | protein | 248 | 38% helix, 23% strand | D1ALR7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 85 | 0.34 | 0.75 | 14 | empty |
| 2 | 89 | 0.33 | 0.74 | 19 | SO4 |
Modifications
Observed in the structure: 8 modified (engineered, carboxylation).
Compared structures
- 6N1N · Crystal structure of class D beta-lactamase from Sebaldella termitidis ATCC 33386 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D1ALR7
- Elsewhere: RCSB PDB 6N1N · PDBe 6N1N · UniProt D1ALR7
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