MolNFT v1 · #157491 · protein
Crystal structure of TDP1 catalytic domain in complex with compound XZ577
6N17: “Crystal structure of TDP1 catalytic domain in complex with compound XZ577”. X-ray diffraction, 1 ligand (K8Y). MolNFT v1 #157491 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6N17
- Type
- protein
- Length
- 876 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9NUW8
- Ligands
- K8Y
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 438 | — | Q9NUW8 |
Ligands and binding sites
- K8Y · 4-[(3-carboxypropanoyl)amino]benzene-1,2-dicarboxylic acid · ligand · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 5 copies · chains A, B
- DMS · Dimethyl sulfoxide · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6N17 · Crystal structure of Tdp1 catalytic domain in complex with compound XZ577 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NUW8
- Elsewhere: RCSB PDB 6N17 · PDBe 6N17 · UniProt Q9NUW8
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