MolNFT v1 · #15735 · protein
Nitrite reductase from alcaligenes xylosoxidans
1NDT · Protein (nitrite reductase): “Nitrite reductase from alcaligenes xylosoxidans”. X-ray diffraction, 2 ligands (CU, CL), 1 pocket (best druggability 0.41). MolNFT v1 #15735 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1NDT
- Type
- protein
- Length
- 336 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein (nitrite reductase)
- EC
- 1.7.99.3
- UniProt
- O68601
- Ligands
- CU, CL
- Pockets
- 1 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein (nitrite reductase) (EC 1.7.99.3) | protein | 336 | 11% helix, 39% strand | O68601 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 82 | 0.41 | 0.79 | 17 | empty |
Compared structures
- 1NDT · Nitrite reductase from alcaligenes xylosoxidans · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O68601
- Elsewhere: RCSB PDB 1NDT · PDBe 1NDT · UniProt O68601
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