MolNFT v1 · #157144 · protein
Tagt bound to li-wta
6MPT · Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid…: “Tagt bound to li-wta”. X-ray diffraction, 2 ligands (C30, CL), 3 pockets (best druggability 0.83). MolNFT v1 #157144 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 6MPT
- Type
- protein
- Length
- 253 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase tagt
- EC
- 2.7.8.-
- UniProt
- Q7WY78
- Ligands
- C30, CL
- Pockets
- 3 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase tagt (EC 2.7.8.-) | protein | 253 | 36% helix, 25% strand | Q7WY78 |
Ligands and binding sites
- C30 · 2-(acetylamino)-2-deoxy-1-O-[(S)-{[(R)-{[(2Z,6Z,10E, 14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10, 14,18,22-hexaen-1-yl]oxy}(hydroxy) phosphoryl]oxy}(hydroxy)phosphoryl]-alpha-D-glucopyranose · ligand · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 786 | 0.83 | 0.85 | 58 | C30 |
| 2 | 56 | 0.51 | 0.87 | 21 | empty |
| 3 | 91 | 0.39 | 0.77 | 21 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7WY78
- Elsewhere: RCSB PDB 6MPT · PDBe 6MPT · UniProt Q7WY78
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