MolNFT v1 · #157143 · protein
Tagt bound to liia-wta
6MPS · Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid…: “Tagt bound to liia-wta”. X-ray diffraction, 3 ligands (JXD, MG, CL), 4 pockets (best druggability 0.81). MolNFT v1 #157143 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6MPS
- Type
- protein
- Length
- 255 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase tagt
- EC
- 2.7.8.-
- UniProt
- Q7WY78
- Ligands
- JXD, MG, CL
- Pockets
- 4 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase tagt (EC 2.7.8.-) | protein | 255 | 37% helix, 25% strand | Q7WY78 |
Ligands and binding sites
- JXD · 2-(acetylamino)-4-O-[2-(acetylamino)-2-deoxy-beta-D-mannopyranosyl]-2-deoxy-1-O-[(S)-{[(R)-{[(2Z,6Z,10Z, 14E,18E)-3,7,11,15,19,23-hexamethyltetracosa-2,6,10, 14,18,22-hexaen-1-yl]oxy}(hydroxy) phosphoryl]oxy}(hydroxy)phosphoryl]-alpha-D-glucopyranose · ligand · chains A
- MG · Magnesium ion · metal · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 765 | 0.81 | 0.84 | 55 | JXD |
| 2 | 69 | 0.34 | 0.76 | 20 | empty |
| 3 | 55 | 0.29 | 0.75 | 14 | empty |
| 4 | 51 | 0.29 | 0.75 | 12 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7WY78
- Elsewhere: RCSB PDB 6MPS · PDBe 6MPS · UniProt Q7WY78
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