MolNFT v1 · #157121 · protein

Crystal structure of BLMAN5B solved by siras

6MP2: “Crystal structure of BLMAN5B solved by siras”. X-ray diffraction, 9 pockets (best druggability 0.82). MolNFT v1 #157121 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6MP2
Type: protein
Length: 838 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: BLMAN5B
UniProt: B3DQP5
Pockets: 9 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	BLMAN5B	protein	419	42% helix, 15% strand	B3DQP5

Ligands and binding sites

GOL · Glycerol · additive · 8 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

9 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	201	0.82	0.96	42	empty
2	62	0.71	0.96	22	empty
3	308	0.65	0.81	27	GOL
4	311	0.64	0.80	25	GOL
5	108	0.50	0.81	26	GOL

Interfaces

1 interface between chains.

A–B · 1720 Å² buried · 35 hydrogen bonds · protein-protein

Compared structures

6MP2 · Crystal structure of BlMan5B solved by SIRAS · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B3DQP5
Elsewhere: RCSB PDB 6MP2 · PDBe 6MP2 · UniProt B3DQP5

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