MolNFT v1 · #157099 · protein
Dimeric darpin C_R3
6MOG: “Dimeric darpin C_R3”. X-ray diffraction, 2 pockets (best druggability 0.53). MolNFT v1 #157099 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6MOG
- Type
- protein
- Length
- 315 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Darpin C_R3
- Pockets
- 2 · best druggability 0.53
Structure
x-ray diffraction · 2 distinct chains · 55% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Darpin C_R3 | protein | 157 | 55% helix, 0% strand | — |
| B | Darpin C_R3 | protein | 158 | 55% helix, 0% strand | — |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 10 copies · chains A, B
- PGE · Triethylene glycol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 180 | 0.53 | 0.79 | 21 | EDO |
| 2 | 87 | 0.46 | 0.81 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 848 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 6MOG · Dimeric DARPin C_R3 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6MOG · PDBe 6MOG
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