MolNFT v1 · #157080 · protein

Crystal structure of X. citri phosphoglucomutase in complex with CH2FG1P

6MNV · PHOSPHOMANNOMUTASE/PHOSPHOGLUCOMUTASE: “Crystal structure of X. citri phosphoglucomutase in complex with CH2FG1P”. X-ray diffraction, 2 ligands (JVS, MG), 2 pockets (best druggability 0.72). MolNFT v1 #157080 on GenesisL1: 3D…

PDB: 6MNV
Type: protein
Length: 448 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: PHOSPHOMANNOMUTASE/PHOSPHOGLUCOMUTASE
EC: 5.4.2.2
UniProt: A0A2K2R2Z1
Ligands: JVS, MG
Pockets: 2 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	PHOSPHOMANNOMUTASE/PHOSPHOGLUCOMUTASE (EC 5.4.2.2)	protein	448	41% helix, 21% strand	A0A2K2R2Z1

Ligands and binding sites

JVS · 1-deoxy-1-fluoro-2-O-phosphono-alpha-D-gluco-hept-2-ulopyranose · ligand · chains A
MG · Magnesium ion · metal · chains A
PGE · Triethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	396	0.72	0.84	42	JVS
2	54	0.30	0.76	15	empty

Compared structures

6MNV · Crystal structure of X. citri phosphoglucomutase in complex with CH2FG1P · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2K2R2Z1
Elsewhere: RCSB PDB 6MNV · PDBe 6MNV · UniProt A0A2K2R2Z1

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