MolNFT v1 · #156982 · protein

Crystal structure of the periplasmic lysine-, arginine-, ornithine- binding protein (lao) D11A mutant from salmonella typhimurium complexed with histidine

6MKW · LYSINE/ARGININE/ORNITHINE transport protein: “Crystal structure of the periplasmic lysine-, arginine-, ornithine- binding protein (lao) D11A mutant from…”. X-ray diffraction, 1 ligand (HIS), 1 pocket (best druggability 0.36). MolNFT…

PDB: 6MKW
Type: protein
Length: 237 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: LYSINE/ARGININE/ORNITHINE transport protein
UniProt: A0A0F6B499
Ligands: HIS
Pockets: 1 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	LYSINE/ARGININE/ORNITHINE transport protein	protein	237	38% helix, 24% strand	A0A0F6B499

Ligands and binding sites

HIS · Histidine · ligand · chains A
GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	87	0.36	0.75	17	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

6MKW · Crystal structure of the periplasmic Lysine-, Arginine-, Ornithine-binding protein (LAO)… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0F6B499
Elsewhere: RCSB PDB 6MKW · PDBe 6MKW · UniProt A0A0F6B499

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