MolNFT v1 · #156970 · protein
Crystal structure of penicillin binding protein 5 (PBP5) from enterococcus faecium in the closed conformation
6MKJ: “Crystal structure of penicillin binding protein 5 (PBP5) from enterococcus faecium in the closed conformation”. X-ray diffraction, 4 pockets (best druggability 0.46). MolNFT v1 #156970 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6MKJ
- Type
- protein
- Length
- 621 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Penicillin binding protein 5 (PBP5)
- UniProt
- A0A075Q0W3
- Pockets
- 4 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Penicillin binding protein 5 (PBP5) | protein | 621 | 34% helix, 25% strand | A0A075Q0W3 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 149 | 0.46 | 0.77 | 18 | empty |
| 2 | 127 | 0.39 | 0.75 | 27 | empty |
| 3 | 80 | 0.34 | 0.75 | 20 | empty |
| 4 | 51 | 0.26 | 0.74 | 11 | empty |
Compared structures
- 6MKJ · Crystal structure of penicillin binding protein 5 (PBP5) from Enterococcus faecium in the… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A075Q0W3
- Elsewhere: RCSB PDB 6MKJ · PDBe 6MKJ · UniProt A0A075Q0W3
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