MolNFT v1 · #156916 · RNA

Crystal structure of the complete turnip yellow mosaic virus 3'UTR

6MJ0 · RNA (101-mer): “Crystal structure of the complete turnip yellow mosaic virus 3'UTR”. X-ray diffraction, 10 pockets (best druggability 0.72). MolNFT v1 #156916 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6MJ0
Type: RNA
Length: 202 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA (101-mer)
Pockets: 10 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	RNA (101-mer)	rna	101	—	—

Pockets

10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	997	0.72	0.77	52	empty
2	1083	0.69	0.75	51	empty
3	506	0.65	0.78	29	empty
4	163	0.53	0.81	12	empty
5	142	0.49	0.80	12	empty

Interfaces

1 interface between chains.

A–B · 924 Å² buried · 23 hydrogen bonds · nucleic-nucleic

Compared structures

6MJ0 · Crystal structure of the complete turnip yellow mosaic virus 3'UTR · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6MJ0 · PDBe 6MJ0

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