MolNFT v1 · #156822 · protein

Thermosulfurimonas dismutans kpsc, beta kdo 2,7 transferase

6MGD · Capsular polysaccharide export system protein kpsc: “Thermosulfurimonas dismutans kpsc, beta kdo 2,7 transferase”. X-ray diffraction, 5 pockets (best druggability 0.70). MolNFT v1 #156822 on GenesisL1: 3D structure, binding sites…

PDB: 6MGD
Type: protein
Length: 589 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Capsular polysaccharide export system protein kpsc
UniProt: A0A179D3Y0
Pockets: 5 · best druggability 0.70

Structure

x-ray diffraction · 2 distinct chains · 34% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Capsular polysaccharide export system protein kpsc	protein	296	34% helix, 18% strand	A0A179D3Y0
B	Capsular polysaccharide export system protein kpsc	protein	293	34% helix, 18% strand	A0A179D3Y0

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	720	0.70	0.77	68	empty
2	331	0.63	0.79	34	empty
3	55	0.47	0.85	15	empty
4	140	0.38	0.73	22	empty
5	117	0.38	0.74	19	empty

Interfaces

1 interface between chains.

A–B · 642 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

6MGD · Thermosulfurimonas dismutans KpsC, beta Kdo 2,7 transferase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A179D3Y0
Elsewhere: RCSB PDB 6MGD · PDBe 6MGD · UniProt A0A179D3Y0

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