MolNFT v1 · #156820 · protein
Thermosulfurimonas dismutans kpsc, beta kdo 2,4 transferase
6MGB · Capsular polysaccharide export system protein kpsc: “Thermosulfurimonas dismutans kpsc, beta kdo 2,4 transferase”. X-ray diffraction, 3 ligands (C5P, MG, CL), 1 pocket (best druggability 0.78). MolNFT v1 #156820 on GenesisL1: 3D…
- PDB
- 6MGB
- Type
- protein
- Length
- 321 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsular polysaccharide export system protein kpsc
- UniProt
- A0A179D1D1
- Ligands
- C5P, MG, CL
- Pockets
- 1 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsular polysaccharide export system protein kpsc | protein | 321 | 32% helix, 17% strand | A0A179D1D1 |
Ligands and binding sites
- C5P · Cytidine-5'-monophosphate · ligand · chains A
- MG · Magnesium ion · metal · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 556 | 0.78 | 0.84 | 59 | CL, MG, C5P |
Compared structures
- 6MGB · Thermosulfurimonas dismutans KpsC, beta Kdo 2,4 transferase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A179D1D1
- Elsewhere: RCSB PDB 6MGB · PDBe 6MGB · UniProt A0A179D1D1
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