MolNFT v1 · #156692 · protein + RNA
Cryoem structure of ACRIIA2 homolog in complex with CRISPR-CAS9
6MCC · Single guide RNA (116-mer): “Cryoem structure of ACRIIA2 homolog in complex with CRISPR-CAS9”. Electron microscopy, 20 pockets (best druggability 0.86). MolNFT v1 #156692 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6MCC
- Type
- protein + RNA
- Length
- 1,610 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Single guide RNA (116-mer); CRISPR-associated endonuclease CAS9; Anti-CRISPR ACRIIA2…
- EC
- 3.1.-.-
- UniProt
- J7M7J1
- Pockets
- 20 · best druggability 0.86
Structure
electron microscopy · 3 distinct chains · 38% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Single guide RNA (116-mer) | rna | 116 | — | — |
| A | CRISPR-associated endonuclease CAS9 (EC 3.1.-.-) | protein | 1364 | 40% helix, 11% strand | J7M7J1 |
| C | Anti-CRISPR ACRIIA2 homolog | protein | 130 | 23% helix, 22% strand | — |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1073 | 0.86 | 0.88 | 105 | empty |
| 2 | 606 | 0.79 | 0.85 | 56 | empty |
| 3 | 363 | 0.79 | 0.89 | 44 | empty |
| 4 | 596 | 0.75 | 0.82 | 64 | empty |
| 5 | 189 | 0.74 | 0.91 | 38 | empty |
Interfaces
3 interfaces between chains.
- B–A · 7242 Ų buried · 139 hydrogen bonds · protein-nucleic
- A–C · 1438 Ų buried · 9 hydrogen bonds · protein-protein
- B–C · 126 Ų buried · 1 hydrogen bond · protein-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 6MCC · CryoEM structure of AcrIIA2 homolog in complex with CRISPR-Cas9 · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt J7M7J1
- Elsewhere: RCSB PDB 6MCC · PDBe 6MCC · UniProt J7M7J1
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