MolNFT v1 · #156664 · protein
Gphf dehydratase P1711L variant for improved crystallization
6MBG: “Gphf dehydratase P1711L variant for improved crystallization”. X-ray diffraction, 1 ligand (MG), 3 pockets (best druggability 0.65). MolNFT v1 #156664 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6MBG
- Type
- protein
- Length
- 280 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gphf
- UniProt
- U6BSB2
- Ligands
- MG
- Pockets
- 3 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 21% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gphf | protein | 280 | 21% helix, 41% strand | U6BSB2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 138 | 0.65 | 0.87 | 30 | BU1, MG |
| 2 | 58 | 0.37 | 0.79 | 14 | BU1 |
| 3 | 53 | 0.28 | 0.75 | 16 | empty |
Compared structures
- 6MBG · GphF Dehydratase P1711L variant for improved crystallization · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt U6BSB2
- Elsewhere: RCSB PDB 6MBG · PDBe 6MBG · UniProt U6BSB2
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