MolNFT v1 · #156653 · protein

Aac-iiib binary with neomycin

6MB5 · AAC(3)-iiib protein: “Aac-iiib binary with neomycin”. X-ray diffraction, 1 ligand (NMY), 1 pocket (best druggability 0.65). MolNFT v1 #156653 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6MB5
Type: protein
Length: 265 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: AAC(3)-iiib protein
UniProt: Q51405
Ligands: NMY
Pockets: 1 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	AAC(3)-iiib protein	protein	265	34% helix, 22% strand	Q51405

Ligands and binding sites

NMY · Neomycin · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	276	0.65	0.81	43	NMY

Compared structures

6MB5 · AAC-IIIb binary with NEOMYCIN · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q51405
Elsewhere: RCSB PDB 6MB5 · PDBe 6MB5 · UniProt Q51405

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