MolNFT v1 · #156635 · protein
Crystal structure of a dnan sliding clamp DNA polymerase III subunit beta from rickettsia bellii RML369-C
6MAN · Beta sliding clamp: “Crystal structure of a dnan sliding clamp DNA polymerase III subunit beta from rickettsia bellii RML369-C”. X-ray diffraction, 1 ligand (SCN), 4 pockets (best druggability 0.43). MolNFT v1 #156635 on GenesisL1…
- PDB
- 6MAN
- Type
- protein
- Length
- 754 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta sliding clamp
- UniProt
- Q1RIS7
- Ligands
- SCN
- Pockets
- 4 · best druggability 0.43
Structure
x-ray diffraction · 2 distinct chains · 21% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta sliding clamp | protein | 380 | 22% helix, 44% strand | Q1RIS7 |
| B | Beta sliding clamp | protein | 374 | 20% helix, 44% strand | Q1RIS7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 103 | 0.43 | 0.78 | 25 | empty |
| 2 | 94 | 0.38 | 0.76 | 18 | empty |
| 3 | 64 | 0.34 | 0.77 | 15 | empty |
| 4 | 70 | 0.33 | 0.76 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1199 Ų buried · 24 hydrogen bonds · protein-protein
Compared structures
- 6MAN · Crystal structure of a DnaN sliding clamp DNA polymerase III subunit beta from Rickettsia… · the same entry in another collection · chain A against A, TM-score 1.00
- Q1RIS7 · AlphaFold monomer V2.0 prediction for beta sliding clamp (Q1RIS7) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1RIS7
- Elsewhere: RCSB PDB 6MAN · PDBe 6MAN · UniProt Q1RIS7
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