MolNFT v1 · #156621 · protein
Human CYP3A4 bound to an inhibitor metyrapone
6MA6 · Cytochrome P450 3A4: “Human CYP3A4 bound to an inhibitor metyrapone”. X-ray diffraction, 2 ligands (HEM, MYT), 7 pockets (best druggability 0.87). MolNFT v1 #156621 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6MA6
- Type
- protein
- Length
- 466 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome P450 3A4
- EC
- 1.14.14.-, 1.14.14.56, 1.14.14.55
- UniProt
- P08684
- Ligands
- HEM, MYT
- Pockets
- 7 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome P450 3A4 (EC 1.14.14.-, 1.14.14.56, 1.14.14.55) | protein | 466 | 51% helix, 9% strand | P08684 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- MYT · Metyrapone · ligand · chains A
- GOL · Glycerol · additive · chains A
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 976 | 0.87 | 0.88 | 74 | HEM, MYT |
| 2 | 80 | 0.52 | 0.84 | 11 | empty |
| 3 | 147 | 0.47 | 0.77 | 31 | GOL |
| 4 | 148 | 0.40 | 0.73 | 16 | empty |
| 5 | 65 | 0.32 | 0.75 | 15 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08684
- Elsewhere: RCSB PDB 6MA6 · PDBe 6MA6 · UniProt P08684
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