MolNFT v1 · #1566 · protein

Rat outer mitochondrial membrane cytochrome B5

1B5M: “Rat outer mitochondrial membrane cytochrome B5”. X-ray diffraction, 1 ligand (HEM), 1 pocket (best druggability 0.61). MolNFT v1 #1566 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1B5M
Type: protein
Length: 84 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome B5
UniProt: P04166
Ligands: HEM
Pockets: 1 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome B5	protein	84	25% helix, 21% strand	P04166

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	110	0.61	0.86	20	HEM

Compared structures

1B5M · Rat outer mitochondrial membrane cytochrome B5 · the same entry in another collection · chain A against A, TM-score 1.00
P04166 · AlphaFold monomer V2.0 prediction for cytochrome B5 type B (P04166) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04166
Elsewhere: RCSB PDB 1B5M · PDBe 1B5M · UniProt P04166

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.