MolNFT v1 · #156581 · protein

Crystal structure of ubix-like FMN prenyltransferase AF1214 from archaeoglobus fulgidus, FMN complex

6M8T · Flavin prenyltransferase ubix: “Crystal structure of ubix-like FMN prenyltransferase AF1214 from archaeoglobus fulgidus, FMN complex”. X-ray diffraction, 2 ligands (FMN, PO4), 1 pocket (best druggability 0.34). MolNFT v1 #156581 on…

PDB: 6M8T
Type: protein
Length: 189 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Flavin prenyltransferase ubix
EC: 2.5.1.129
UniProt: O29054
Ligands: FMN, PO4
Pockets: 1 · best druggability 0.34

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Flavin prenyltransferase ubix (EC 2.5.1.129)	protein	189	41% helix, 15% strand	O29054

Ligands and binding sites

FMN · Flavin mononucleotide · ligand · chains A
PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	83	0.34	0.74	13	empty

Compared structures

6M8T · Crystal structure of UbiX-like FMN prenyltransferase AF1214 from Archaeoglobus fulgidus… · the same entry in another collection · chain A against A, TM-score 1.00
O29054 · AlphaFold monomer V2.0 prediction for flavin prenyltransferase ubix (O29054) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O29054
Elsewhere: RCSB PDB 6M8T · PDBe 6M8T · UniProt O29054

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