MolNFT v1 · #156573 · protein
Engineered sperm whale myoglobin-based carbene transferase
6M8F: “Engineered sperm whale myoglobin-based carbene transferase”. X-ray diffraction, 4 ligands (HEM, GLC, FRU), 1 pocket (best druggability 0.72). MolNFT v1 #156573 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6M8F
- Type
- protein
- Length
- 154 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Myoglobin
- UniProt
- P02185
- Ligands
- HEM, GLC, FRU, SO4
- Pockets
- 1 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Myoglobin | protein | 154 | 77% helix, 0% strand | P02185 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- GLC · alpha-D-glucopyranose · sugar
- FRU · beta-D-fructofuranose · sugar · chains A
- SO4 · Sulfate ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 268 | 0.72 | 0.86 | 33 | HEM |
Compared structures
- 6M8F · Engineered sperm whale myoglobin-based carbene transferase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02185
- Elsewhere: RCSB PDB 6M8F · PDBe 6M8F · UniProt P02185
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.