MolNFT v1 · #156544 · protein

Crystal structure of kpc-2 with compound 3

6M7I · Carbapenem-hydrolyzing beta-lactamase kpc: “Crystal structure of kpc-2 with compound 3”. X-ray diffraction, 1 ligand (J84). MolNFT v1 #156544 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6M7I
Type: protein
Length: 267 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Carbapenem-hydrolyzing beta-lactamase kpc
EC: 3.5.2.6
UniProt: Q9F663
Ligands: J84

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Carbapenem-hydrolyzing beta-lactamase kpc (EC 3.5.2.6)	protein	267	46% helix, 17% strand	Q9F663

Ligands and binding sites

J84 · 1-(2,4-dichlorophenyl)-4-(1H-tetrazol-5-yl)-1H-pyrazol-5-amine · ligand · 4 copies · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

6M7I · Crystal structure of KPC-2 with compound 3 · the same entry in another collection · chain A against A, TM-score 1.00
Q9F663 · AlphaFold monomer V2.0 prediction for carbapenem-hydrolyzing beta- lactamase kpc (Q9F663) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9F663
Elsewhere: RCSB PDB 6M7I · PDBe 6M7I · UniProt Q9F663

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.