MolNFT v1 · #156532 · protein

GH31 alpha-N-acetylgalactosaminidase from enterococcus faecalis

6M76 · Lpxtg-motif cell wall anchor domain protein: “GH31 alpha-N-acetylgalactosaminidase from enterococcus faecalis”. X-ray diffraction, 14 pockets (best druggability 0.69). MolNFT v1 #156532 on GenesisL1: 3D structure, binding sites and…

PDB: 6M76
Type: protein
Length: 923 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lpxtg-motif cell wall anchor domain protein
Pockets: 14 · best druggability 0.69

Structure

x-ray diffraction · 1 distinct chain · 19% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lpxtg-motif cell wall anchor domain protein	protein	923	19% helix, 34% strand	—

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 9 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

14 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	253	0.69	0.85	37	EDO
2	322	0.66	0.81	47	EDO
3	350	0.62	0.78	31	empty
4	242	0.51	0.76	33	empty
5	105	0.49	0.81	24	empty

Compared structures

6M76 · GH31 alpha-N-acetylgalactosaminidase from Enterococcus faecalis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6M76 · PDBe 6M76

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