MolNFT v1 · #156518 · protein + RNA
Crystal structure of caenorhabditis elegans dicer-related helicase 3 (drh-3) C-terminal domain with 5'-ppp 8-mer ssrna
6M6R · RNA (5'-R(*(GTP)P*GP*CP*CP*GP*CP*CP*C)-3'): “Crystal structure of caenorhabditis elegans dicer-related helicase 3 (drh-3) C-terminal domain with 5'-ppp…”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #156518 on GenesisL1: 3D…
- PDB
- 6M6R
- Type
- protein + RNA
- Length
- 174 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'-R(*(GTP)P*GP*CP*CP*GP*CP*CP*C)-3'); Dicer related helicase
- UniProt
- Q93413
- Ligands
- ZN
Structure
x-ray diffraction · 2 distinct chains · 31% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | RNA (5'-R(*(GTP)P*GP*CP*CP*GP*CP*CP*C)-3') | rna | 8 | — | — |
| A | Dicer related helicase | protein | 166 | 31% helix, 31% strand | Q93413 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- B–A · 477 Ų buried · 18 hydrogen bonds · protein-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 6M6R · Crystal structure of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3) C-terminal… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q93413
- Elsewhere: RCSB PDB 6M6R · PDBe 6M6R · UniProt Q93413
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