MolNFT v1 · #156512 · DNA
NMR solution structure of a DNA minidumbbell containing an abasic bulge between two cctg repeats
6M6K · DNA (5'-D(*CP*TP*TP*GP*(3DR)P*CP*TP*TP*G)-3'): “NMR solution structure of a DNA minidumbbell containing an abasic bulge between two cctg repeats”. Solution nmr, 1 ligand (NA). MolNFT v1 #156512 on GenesisL1: 3D structure, binding…
- PDB
- 6M6K
- Type
- DNA
- Length
- 9 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*TP*TP*GP*(3DR)P*CP*TP*TP*G)-3')
- Ligands
- NA
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*CP*TP*TP*GP*(3DR)P*CP*TP*TP*G)-3') | dna | 9 | — | — |
Ligands and binding sites
- NA · Sodium ion · metal · 8 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 6M6K · NMR solution structure of a DNA minidumbbell containing an abasic bulge between two CCTG… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6M6K · PDBe 6M6K
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