MolNFT v1 · #156472 · protein

Human serum albumin (apo form)

6M5D: “Human serum albumin (apo form)”. X-ray diffraction, 1 ligand (PO4), 7 pockets (best druggability 0.80). MolNFT v1 #156472 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6M5D
Type: protein
Length: 566 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Serum albumin
UniProt: P02768
Ligands: PO4
Pockets: 7 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 67% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Serum albumin	protein	566	67% helix, 0% strand	P02768

Ligands and binding sites

PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	768	0.80	0.83	62	PO4
2	630	0.72	0.79	42	empty
3	90	0.68	0.93	23	empty
4	148	0.59	0.84	21	empty
5	115	0.51	0.81	13	empty

Modifications

Observed in the structure: 16 disulfide (disulfide).

Compared structures

6M5D · Human serum albumin (apo form) · the same entry in another collection · chain A against A, TM-score 1.00
P02768 · AlphaFold monomer V2.0 prediction for albumin (P02768) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02768
Elsewhere: RCSB PDB 6M5D · PDBe 6M5D · UniProt P02768

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