MolNFT v1 · #156452 · protein
Cytochrome P450 monooxygenase STVP2 substrate-bound structure
6M4P: “Cytochrome P450 monooxygenase STVP2 substrate-bound structure”. X-ray diffraction, 2 ligands (HEM, F4O), 8 pockets (best druggability 0.80). MolNFT v1 #156452 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6M4P
- Type
- protein
- Length
- 753 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome P450
- UniProt
- A0A286SBY7
- Ligands
- HEM, F4O
- Pockets
- 8 · best druggability 0.80
Structure
x-ray diffraction · 2 distinct chains · 49% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome P450 | protein | 378 | 48% helix, 11% strand | A0A286SBY7 |
| B | Cytochrome P450 | protein | 375 | 50% helix, 10% strand | A0A286SBY7 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
- F4O · 6-methoxy-streptovaricin C · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 660 | 0.80 | 0.84 | 59 | HEM, F4O |
| 2 | 717 | 0.79 | 0.83 | 64 | HEM, F4O |
| 3 | 570 | 0.68 | 0.78 | 52 | empty |
| 4 | 453 | 0.61 | 0.76 | 45 | empty |
| 5 | 91 | 0.38 | 0.76 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 319 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 6M4P · Cytochrome P450 monooxygenase StvP2 substrate-bound structure · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A286SBY7
- Elsewhere: RCSB PDB 6M4P · PDBe 6M4P · UniProt A0A286SBY7
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