MolNFT v1 · #156268 · protein
Crystal structure of a N-methyltransferase cktbs from camellia assamica var. kucha
6LYI: “Crystal structure of a N-methyltransferase cktbs from camellia assamica var. kucha”. X-ray diffraction, 5 pockets (best druggability 0.76). MolNFT v1 #156268 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6LYI
- Type
- protein
- Length
- 663 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- N-methyltransferase cktbs
- Pockets
- 5 · best druggability 0.76
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | N-methyltransferase cktbs | protein | 322 | 42% helix, 20% strand | — |
| B | N-methyltransferase cktbs | protein | 341 | 45% helix, 18% strand | — |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 621 | 0.76 | 0.82 | 74 | empty |
| 2 | 318 | 0.70 | 0.83 | 36 | empty |
| 3 | 55 | 0.59 | 0.91 | 15 | empty |
| 4 | 157 | 0.42 | 0.74 | 36 | empty |
| 5 | 64 | 0.36 | 0.77 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 1259 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 6LYI · Crystal structure of a N-methyltransferase CkTbS from Camellia assamica var. kucha · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6LYI · PDBe 6LYI
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