MolNFT v1 · #156186 · protein
Polyextremophilic beta-galactosidase from the antarctic haloarchaeon halorubrum lacusprofundi
6LVW · Beta-galactosidase bga: “Polyextremophilic beta-galactosidase from the antarctic haloarchaeon halorubrum lacusprofundi”. X-ray diffraction, 2 ligands (ZN, MG), 5 pockets (best druggability 0.66). MolNFT v1 #156186 on GenesisL1: 3D…
- PDB
- 6LVW
- Type
- protein
- Length
- 668 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-galactosidase bga
- EC
- 3.2.1.23
- UniProt
- B9LW38
- Ligands
- ZN, MG
- Pockets
- 5 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-galactosidase bga (EC 3.2.1.23) | protein | 668 | 33% helix, 19% strand | B9LW38 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 486 | 0.66 | 0.78 | 56 | empty |
| 2 | 298 | 0.61 | 0.79 | 31 | empty |
| 3 | 188 | 0.47 | 0.75 | 36 | empty |
| 4 | 157 | 0.45 | 0.76 | 28 | empty |
| 5 | 71 | 0.36 | 0.77 | 17 | empty |
Compared structures
- 6LVW · Polyextremophilic Beta-galactosidase from the Antarctic haloarchaeon Halorubrum… · the same entry in another collection · chain A against A, TM-score 1.00
- B9LW38 · AlphaFold monomer V2.0 prediction for beta-galactosidase bga (B9LW38) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B9LW38
- Elsewhere: RCSB PDB 6LVW · PDBe 6LVW · UniProt B9LW38
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