MolNFT v1 · #156179 · protein
Enoyl-CoA hydratase (hyech) from hymenobacter sp. pamc 26628
6LVP: “Enoyl-CoA hydratase (hyech) from hymenobacter sp. pamc 26628”. X-ray diffraction, 8 pockets (best druggability 0.83). MolNFT v1 #156179 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6LVP
- Type
- protein
- Length
- 789 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Enoyl-CoA hydratase
- UniProt
- A0A126PEF4
- Pockets
- 8 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 52% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Enoyl-CoA hydratase | protein | 263 | 52% helix, 17% strand | A0A126PEF4 |
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1096 | 0.83 | 0.84 | 95 | empty |
| 2 | 258 | 0.65 | 0.82 | 40 | empty |
| 3 | 259 | 0.65 | 0.82 | 44 | empty |
| 4 | 233 | 0.64 | 0.82 | 41 | empty |
| 5 | 146 | 0.45 | 0.76 | 19 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1885 Ų buried · 20 hydrogen bonds · protein-protein
- B–C · 1868 Ų buried · 21 hydrogen bonds · protein-protein
- A–C · 1848 Ų buried · 22 hydrogen bonds · protein-protein
Compared structures
- 6LVP · Enoyl-CoA hydratase (HyECH) from Hymenobacter sp. PAMC 26628 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A126PEF4
- Elsewhere: RCSB PDB 6LVP · PDBe 6LVP · UniProt A0A126PEF4
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