MolNFT v1 · #156177 · protein
Structure of the 2019-ncov HR2 domain
6LVN · Spike protein S2': “Structure of the 2019-ncov HR2 domain”. X-ray diffraction. MolNFT v1 #156177 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6LVN
- Type
- protein
- Length
- 136 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Spike protein S2'
- UniProt
- P0DTC2
Structure
x-ray diffraction · 3 distinct chains · 93% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | Spike protein S2' | protein | 34 | 94% helix, 0% strand | P0DTC2 |
| B | Spike protein S2' | protein | 35 | 91% helix, 0% strand | P0DTC2 |
| C | Spike protein S2' | protein | 33 | 94% helix, 0% strand | P0DTC2 |
Interfaces
3 interfaces between chains.
- B–D · 710 Ų buried · 0 hydrogen bonds · protein-protein
- A–C · 704 Ų buried · 0 hydrogen bonds · protein-protein
- C–D · 105 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 6LVN · Structure of the 2019-nCoV HR2 Domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 6LVN · PDBe 6LVN · UniProt P0DTC2
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