MolNFT v1 · #156125 · protein

Crystal structure of a substrate binding protein from microbacterium hydrocarbonoxydans complexed with 4-hydroxybenzoate hydrazide

6LU3: “Crystal structure of a substrate binding protein from microbacterium hydrocarbonoxydans complexed with…”. X-ray diffraction, 1 ligand (HDH), 3 pockets (best druggability 0.84). MolNFT v1 #156125 on GenesisL1: 3D structure, binding…

PDB: 6LU3
Type: protein
Length: 480 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Substrate binding protein
Ligands: HDH
Pockets: 3 · best druggability 0.84

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Substrate binding protein	protein	480	33% helix, 26% strand	—

Ligands and binding sites

HDH · 4-oxidanylbenzohydrazide · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	314	0.84	0.94	65	HDH
2	63	0.71	0.97	20	empty
3	382	0.65	0.79	56	empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

6LU3 · Crystal structure of a substrate binding protein from Microbacterium hydrocarbonoxydans… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6LU3 · PDBe 6LU3

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