MolNFT v1 · #156033 · protein
Hexachlorobenzene monooxygenase (HCBA1) from nocardioides sp. strain PD653
6LR1 · Hexachlorobenzene oxidative dehalogenase: “Hexachlorobenzene monooxygenase (HCBA1) from nocardioides sp. strain PD653”. X-ray diffraction, 7 pockets (best druggability 0.81). MolNFT v1 #156033 on GenesisL1: 3D structure, binding…
- PDB
- 6LR1
- Type
- protein
- Length
- 902 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hexachlorobenzene oxidative dehalogenase
- UniProt
- A0A1V1W347
- Pockets
- 7 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Hexachlorobenzene oxidative dehalogenase | protein | 451 | 43% helix, 15% strand | A0A1V1W347 |
Pockets
7 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1000 | 0.81 | 0.82 | 78 | empty |
| 2 | 820 | 0.75 | 0.79 | 63 | empty |
| 3 | 284 | 0.67 | 0.82 | 36 | empty |
| 4 | 232 | 0.53 | 0.76 | 34 | empty |
| 5 | 169 | 0.50 | 0.78 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 2986 Ų buried · 46 hydrogen bonds · protein-protein
Compared structures
- 6LR1 · Hexachlorobenzene Monooxygenase (HcbA1) from Nocardioides sp. strain PD653 · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1V1W347
- Elsewhere: RCSB PDB 6LR1 · PDBe 6LR1 · UniProt A0A1V1W347
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