MolNFT v1 · #156024 · protein
Crystal structure of honeybee ryr ntd
6LQK · Ryanodine receptor: “Crystal structure of honeybee ryr ntd”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.53). MolNFT v1 #156024 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6LQK
- Type
- protein
- Length
- 338 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ryanodine receptor
- UniProt
- A0A088AV96
- Ligands
- MG
- Pockets
- 1 · best druggability 0.53
Structure
x-ray diffraction · 2 distinct chains · 6% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ryanodine receptor | protein | 173 | 6% helix, 50% strand | A0A088AV96 |
| B | Ryanodine receptor | protein | 165 | 6% helix, 47% strand | A0A088AV96 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 226 | 0.53 | 0.77 | 29 | empty |
Interfaces
1 interface between chains.
- A–B · 273 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 6LQK · Crystal structure of honeybee RyR NTD · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A088AV96
- Elsewhere: RCSB PDB 6LQK · PDBe 6LQK · UniProt A0A088AV96
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