MolNFT v1 · #155959 · protein

Crystal structure of class ib terpene synthase bound with geranylgeraniol

6LOP · Tetraprenyl-beta-curcumene synthase: “Crystal structure of class ib terpene synthase bound with geranylgeraniol”. X-ray diffraction, 1 ligand (ELX), 2 pockets (best druggability 0.82). MolNFT v1 #155959 on GenesisL1: 3D structure…

PDB: 6LOP
Type: protein
Length: 694 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tetraprenyl-beta-curcumene synthase
UniProt: A0A094YZ24
Ligands: ELX
Pockets: 2 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 75% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Tetraprenyl-beta-curcumene synthase	protein	347	75% helix, 0% strand	A0A094YZ24

Ligands and binding sites

ELX · (2~{E},6~{E},10~{E})-3,7,11,15-tetramethylhexadeca-2,6, 10,14-tetraen-1-ol · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	484	0.82	0.89	55	ELX
2	488	0.80	0.87	57	ELX

Interfaces

1 interface between chains.

A–B · 914 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

6LOP · Crystal Structure of Class IB terpene synthase bound with geranylgeraniol · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A094YZ24
Elsewhere: RCSB PDB 6LOP · PDBe 6LOP · UniProt A0A094YZ24

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