MolNFT v1 · #155896 · protein

Crystal structure of zinc binding protein zint from E. COLI

6LM2 · Metal-binding protein zint: “Crystal structure of zinc binding protein zint from E. COLI”. X-ray diffraction, 1 ligand (ZN), 1 pocket (best druggability 0.65). MolNFT v1 #155896 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 6LM2
Type: protein
Length: 184 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Metal-binding protein zint
UniProt: A0A3Z9V4E1
Ligands: ZN
Pockets: 1 · best druggability 0.65

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Metal-binding protein zint	protein	184	29% helix, 30% strand	A0A3Z9V4E1

Ligands and binding sites

ZN · Zinc ion · metal · 8 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	467	0.65	0.77	46	ZN

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

6LM2 · Crystal structure of Zinc binding protein ZinT from E. coli · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A3Z9V4E1
Elsewhere: RCSB PDB 6LM2 · PDBe 6LM2 · UniProt A0A3Z9V4E1

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