MolNFT v1 · #155893 · protein

Crystal structure of fagopyrum esculentum M UGT708C1 complexed with udp-glucose

6LLZ · Udp-glycosyltransferase 708C1: “Crystal structure of fagopyrum esculentum M UGT708C1 complexed with udp-glucose”. X-ray diffraction, 1 ligand (UPG), 8 pockets (best druggability 0.85). MolNFT v1 #155893 on GenesisL1: 3D structure…

PDB: 6LLZ
Type: protein
Length: 872 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Udp-glycosyltransferase 708C1
EC: 2.4.1.-
UniProt: A0A0A1HA03
Ligands: UPG
Pockets: 8 · best druggability 0.85

Structure

x-ray diffraction · 1 distinct chain · 47% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Udp-glycosyltransferase 708C1 (EC 2.4.1.-)	protein	436	47% helix, 14% strand	A0A0A1HA03

Ligands and binding sites

UPG · Uridine-5'-diphosphate-glucose · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1046	0.85	0.86	117	UPG
2	1031	0.83	0.84	110	UPG
3	62	0.47	0.84	15	empty
4	74	0.42	0.80	20	empty
5	73	0.40	0.79	21	empty

Interfaces

1 interface between chains.

A–B · 314 Å² buried · 1 hydrogen bond · protein-protein

Compared structures

6LLZ · Crystal Structure of Fagopyrum esculentum M UGT708C1 complexed with UDP-glucose · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0A1HA03
Elsewhere: RCSB PDB 6LLZ · PDBe 6LLZ · UniProt A0A0A1HA03

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