MolNFT v1 · #155884 · protein
Crystal structure of fagopyrum esculentum M UGT708C1
6LLG · Udp-glycosyltransferase 708C1: “Crystal structure of fagopyrum esculentum M UGT708C1”. X-ray diffraction, 2 ligands (BEN, SO4), 10 pockets (best druggability 0.82). MolNFT v1 #155884 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6LLG
- Type
- protein
- Length
- 870 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Udp-glycosyltransferase 708C1
- EC
- 2.4.1.-
- UniProt
- A0A0A1HA03
- Ligands
- BEN, SO4
- Pockets
- 10 · best druggability 0.82
Structure
x-ray diffraction · 2 distinct chains · 47% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Udp-glycosyltransferase 708C1 (EC 2.4.1.-) | protein | 436 | 48% helix, 14% strand | A0A0A1HA03 |
| B | Udp-glycosyltransferase 708C1 (EC 2.4.1.-) | protein | 434 | 47% helix, 15% strand | A0A0A1HA03 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1111 | 0.82 | 0.83 | 90 | empty |
| 2 | 1097 | 0.82 | 0.83 | 91 | SO4 |
| 3 | 580 | 0.69 | 0.78 | 51 | empty |
| 4 | 56 | 0.50 | 0.86 | 16 | empty |
| 5 | 52 | 0.45 | 0.84 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 345 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 6LLG · Crystal Structure of Fagopyrum esculentum M UGT708C1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0A1HA03
- Elsewhere: RCSB PDB 6LLG · PDBe 6LLG · UniProt A0A0A1HA03
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