MolNFT v1 · #155836 · protein

Ultrahigh resolution X-ray structure of ferredoxin I from C. reinhardtii

6LK1 · Ferredoxin, chloroplastic: “Ultrahigh resolution X-ray structure of ferredoxin I from C. reinhardtii”. X-ray diffraction, 4 ligands (BEN, FES, SCN). MolNFT v1 #155836 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6LK1
Type: protein
Length: 189 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ferredoxin, chloroplastic
UniProt: P07839
Ligands: BEN, FES, SCN, SO4

Structure

x-ray diffraction · 2 distinct chains · 20% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ferredoxin, chloroplastic	protein	94	19% helix, 34% strand	P07839
B	Ferredoxin, chloroplastic	protein	95	20% helix, 34% strand	P07839

Ligands and binding sites

BEN · Benzamidine · ligand · 10 copies · chains A, B
FES · Fe2/s2 (inorganic) cluster · ligand · 2 copies · chains A, B
SCN · Thiocyanate ion · ion · chains A
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 388 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

6LK1 · Ultrahigh resolution X-ray structure of Ferredoxin I from C. reinhardtii · the same entry in another collection · chain A against A, TM-score 1.00
P07839 · AlphaFold monomer V2.0 prediction for ferredoxin, chloroplastic (P07839) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P07839
Elsewhere: RCSB PDB 6LK1 · PDBe 6LK1 · UniProt P07839

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