MolNFT v1 · #155795 · protein
Crystal structure of apo tyrosine decarboxylase
6LIU · TYROSINE/DOPA decarboxylase 2: “Crystal structure of apo tyrosine decarboxylase”. X-ray diffraction, 20 pockets (best druggability 0.82). MolNFT v1 #155795 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6LIU
- Type
- protein
- Length
- 2,780 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TYROSINE/DOPA decarboxylase 2
- EC
- 4.1.1.28, 4.1.1.25
- UniProt
- P54769
- Pockets
- 20 · best druggability 0.82
Structure
x-ray diffraction · 4 distinct chains · 48% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | TYROSINE/DOPA decarboxylase 2 (EC 4.1.1.28, 4.1.1.25) | protein | 477 | 52% helix, 13% strand | P54769 |
| C, D | TYROSINE/DOPA decarboxylase 2 (EC 4.1.1.28, 4.1.1.25) | protein | 474 | 51% helix, 13% strand | P54769 |
| E | TYROSINE/DOPA decarboxylase 2 (EC 4.1.1.28, 4.1.1.25) | protein | 459 | 45% helix, 13% strand | P54769 |
| F | TYROSINE/DOPA decarboxylase 2 (EC 4.1.1.28, 4.1.1.25) | protein | 419 | 42% helix, 13% strand | P54769 |
Pockets
20 pockets found on a 1 Å grid, 13 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1131 | 0.82 | 0.83 | 119 | empty |
| 2 | 202 | 0.82 | 0.96 | 36 | empty |
| 3 | 902 | 0.79 | 0.81 | 88 | empty |
| 4 | 92 | 0.76 | 0.98 | 22 | empty |
| 5 | 87 | 0.75 | 0.98 | 23 | empty |
Interfaces
9 interfaces between chains.
- A–B · 6710 Ų buried · 105 hydrogen bonds · protein-protein
- C–D · 6666 Ų buried · 109 hydrogen bonds · protein-protein
- E–F · 5453 Ų buried · 60 hydrogen bonds · protein-protein
- B–D · 460 Ų buried · 2 hydrogen bonds · protein-protein
- C–E · 274 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P54769
- Elsewhere: RCSB PDB 6LIU · PDBe 6LIU · UniProt P54769
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