MolNFT v1 · #155736 · protein
Structure of rabies virus glycoprotein at basic pH
6LGX · GLYCOPROTEIN,GLYCOPROTEIN,GLYCOPROTEIN: “Structure of rabies virus glycoprotein at basic pH”. X-ray diffraction, 16 pockets (best druggability 0.62). MolNFT v1 #155736 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6LGX
- Type
- protein
- Length
- 725 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GLYCOPROTEIN,GLYCOPROTEIN,GLYCOPROTEIN
- UniProt
- Q5JZZ2, Q2Z2I1, D8VEC1
- Pockets
- 16 · best druggability 0.62
Structure
x-ray diffraction · 2 distinct chains · 15% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | GLYCOPROTEIN,GLYCOPROTEIN,GLYCOPROTEIN | protein | 377 | 16% helix, 32% strand | Q5JZZ2, Q2Z2I1, D8VEC1 |
| B | GLYCOPROTEIN,GLYCOPROTEIN,GLYCOPROTEIN | protein | 348 | 14% helix, 28% strand | Q5JZZ2, Q2Z2I1, D8VEC1 |
Pockets
16 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 461 | 0.62 | 0.76 | 46 | empty |
| 2 | 325 | 0.56 | 0.76 | 43 | empty |
| 3 | 80 | 0.53 | 0.85 | 17 | empty |
| 4 | 138 | 0.52 | 0.80 | 22 | empty |
| 5 | 125 | 0.51 | 0.81 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 187 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 disulfide (disulfide).
Compared structures
- 6LGX · Structure of Rabies virus glycoprotein at basic pH · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5JZZ2
- Every structure of UniProt Q2Z2I1
- Every structure of UniProt D8VEC1
- Elsewhere: RCSB PDB 6LGX · PDBe 6LGX · UniProt Q5JZZ2 · UniProt Q2Z2I1 · UniProt D8VEC1
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